Examples

  1. Find all species containing "drosophila" in the beginning of their names (show)
  2. Find all clades with their Latin names and ranks underneath Bacteria, sorted alphabetically by rank, then name (show)
  3. Find LCA in the OrthoDB tree for fruit fly and honey bee taxons (show)
  4. Find URI and some properties of the orthologous group EOG090604Z7 by its short text label (show)
  5. Find all properties of the orthologous group EOG090604Z7 by its URI (show)
  6. Find all genes with their name and description in the orthologous group EOG090604Z7 (show)
  7. Find A.thaliana genes with their properties by a list of their gene symbols/names (show)
  8. Find all bacterial genes containing word "protease" anywhere in its description (show)
  9. At the LCA level, find all human orthologs of mouse genes with name containing "MAPK", case-insensitive (show)
  10. Find most conservative single copy Danio rerio genes at the Vertebrata level (show)
  11. Find shortest rapidly evolving ssRNA virus genes (show)
  12. Find orthologous human and A.thaliana genes in the group(s) annotated with GO:0006950 (response to stress) (show)
  13. List all xrefs attached to the groups annotated with at least three Interpro domains (IPR011990, IPR013083 and IPR001841) (show)
  14. Find genes with their properties by a list of their xrefs (show)
  15. Find statistics on translated sequence length for genes matching both IPR002117 and GO:0008219 (show)
  16. Find genes having Uniprot xrefs in the group EOG090604Z7, along with their names fetched from Uniprot SPARQL endpoint (show)

Your SPARQL query





milliseconds (values less than 1000 are ignored)




About

This SPARQL 1.1 endpoint serves OrthoDB data. The OrthoDB release 9.1 consists of 1'099'800'457 RDF triples describing evolutionary and functional properties of 23'707'584 genes from 7806 species clustered in 4'541'100 orthologous groups on 291 taxonomic levels.

This endpoint cooperates with both UniProt and Ensembl endpoints due to adopting URIs of UniProt proteins (16'652'480) and Ensembl genes (1'221'246). The dataset also provides a number of clickable links to Ensembl Genomes (15'500'661), NCBI (3'235'228), Interpro (28174) and GO (20287) resources.