v13.0
Examples
Your SPARQL query:
Query Text
Results Format
Auto
HTML
HTML (Basic Browsing Links)
Spreadsheet
XML
JSON
Javascript
Turtle
RDF/XML
N-Triples
CSV
TSV
Execution timeout
milliseconds
(values less than 1000 are ignored)
About
This
SPARQL 1.1
endpoint serves OrthoDB data. The OrthoDB release 13.0 consists of 7.73B RDF triples describing evolutionary and functional properties of 164M genes from 31'888 organisms clustered in 17.8M orthologous groups on 990 taxonomic levels. The data might be explored using
Umaka data browser
, as well as WIDOCO-generated
documentation
.
Here
is an intro for the RDF data model.
This endpoint cooperates with
UniProt
and
StringDB
endpoints due to adopting URIs of UniProt proteins (79.2M), and StringDB genes (16.6M). The dataset also provides a number of clickable links to pages describing NCBI genes (28.1M) and proteins (142M), Ensembl Vertebrata (aka classic) genes (1.94M) and proteins (2.42M), as well as to KEGG (13.2M), Interpro (40K) and GO (25K) identifiers.
Need help? Please, email support[at]orthodb.org
v13.0
v13.0