release 10

Examples

  1. Find all OrthoDB species with attached OrthoDB organisms containing "drosophila" in the beginning of the taxonomic name (show)
  2. Find all clades, i.e. taxonomic levels where orthologous groups were built on, with their Latin names and ranks underneath Bacteria, sorted alphabetically by rank, then name (show)
  3. Find LCA in the OrthoDB tree for fruit fly and honey bee taxons (show)
  4. Find URI and some properties of the orthologous group 6400at314295 by its short text label (show)
  5. Find all properties of the orthologous group 6400at314295 by its URI (show)
  6. Find all genes with their name and description in the orthologous group 6400at314295 (show)
  7. Find A.thaliana genes with their properties by a list of their gene symbols/names (show)
  8. Find in any organsim under Gammaproteobacteria all genes containing word "protease", case-insensitive, anywhere in description (show)
  9. At the LCA level, find all human orthologs of mouse genes with name containing "MAPK", case-insensitive (show)
  10. Find most conservative single copy Danio rerio genes at the Vertebrata level (show)
  11. Find shortest rapidly evolving ssRNA virus genes (show)
  12. Find orthologous human and A.thaliana genes in the group(s) annotated with GO:0006950 (response to stress) (show)
  13. List all xrefs attached to the groups annotated with at least three Interpro domains (IPR011990, IPR013083 and IPR001841) (show)
  14. Find genes with their properties by a list of their xrefs (show)
  15. Find orthologous group/s at any level containing protein with Uniprot id P12345 (show)
  16. Find statistics on translated sequence length for genes matching both IPR002117 and GO:0008219 (show)
  17. Find genes having Uniprot xrefs in the group 6400at314295, along with their names fetched from Uniprot SPARQL endpoint (show)

Your SPARQL query:





milliseconds (values less than 1000 are ignored)




About

This SPARQL 1.1 endpoint serves OrthoDB data. The OrthoDB release 10.0 consists of 1'746'767'734 RDF triples describing evolutionary and functional properties of 40'558'807 genes from 13772 species clustered in 8'553'285 orthologous groups on 978 taxonomic levels.

This endpoint cooperates with UniProt endpoint due to adopting URIs of UniProt proteins (21'810'630). The dataset also provides a number of clickable links to NCBI (13'482'795), Interpro (33945) and GO (23552) resources.